Engineering Rhizobiome of Flue-Cured Virginia (FCV) Tobacco to Improve Productivity in Karnataka, India: A Review

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Published: 2022-10-29

Page: 133-141


S. S. Sreenivas *

ICAR-Central Tobacco Research Institute, Rajahmundry 533 105, AP, India.

*Author to whom correspondence should be addressed.


Abstract

Flue-Cured Virginia (FCV) tobacco is an important commercial kharif crop in Southern Transitional Zone (STZ) of Karnataka, India. FCV tobacco is a mono crop over the years alternated mainly with maize a nutrient exhaustive crop. Due to continuous cropping soils have become poor influencing crop growth parameters. Changed soil characters are also, likely to influence rhizosphere microbial activity leading to pH aberrations and enzyme activity. To cope up with the climate change it is necessary to understand the rhizobiome, its diversity and plant-biome interaction under given conditions in STZ. Rhizobiome which is an important component in providing ecological services to crop has to be perfected for better crop establishment. Several bacterial and fungal communities have specific roles in improving the soil conditions for better uptake of nutrients in addition to protection from pathogens. Though several bioagents are being advocated against diseases, the survival and multiplication of introduced bioagent is not encouraging. Plants establish rhizobiome of specific requirement through root secretions for mutual advantage. Since tobacco is very sensitive crop, need to manage nutrients judiciously.

Keywords: FCV tobacco, Southern Transition Zone, Karnataka, crop growth, rhizosphere; biogents, engineered rhizobiome


How to Cite

Sreenivas, S. S. 2022. “Engineering Rhizobiome of Flue-Cured Virginia (FCV) Tobacco to Improve Productivity in Karnataka, India: A Review”. Asian Journal of Research and Review in Agriculture 4 (1):133-41. https://jagriculture.com/index.php/AJRRA/article/view/42.

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References

Jacob Bulenga Lisuma, Zavuga Zuberi, Patrick Alois Ndakidemi, Ernest Rashid Mbega. Linking rhizosphere bacterial diversity and soil fertility in tobacco plants under different soil types and cropping pattern in Tanzania: A pilot study. Heliyon. 2020;6:e04278.

Nadeem SM, Ahmad M, Zahir ZA, Javaid A, Ashraf M. The role of mycorrhizae and plant growth promoting rhizobacteria (PGPR) in improving crop productivity under stressful environments. Biotechnology Advances. 2014;32(2):429-448.

Tkacz J, Cheema G, Chandra A. Grant, Poole PS. Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition. ISME J. 2015;9(11):2349–59. DOI:https://doi.org/10.1038/ismej.2015.41 PMID: 25909975.

Kazeeroni EA, Al-Sadi AM. 454-pyrosequencing reveals variable fungal diversity across farming systems. Front Plant Sci. 2016;7:314.

DOI:https://doi.org/10.3389/fpls.2016.00314PMID: 27014331

Javaid A. Arbuscular mycorrhizal mediated nutrition in plants. Journal of Plant Nutrition 2009;32(10): 1595-1618.

Javaid A, Khan IH. Mycorrhizal fungi associated with mungbean. Mycopath. 2019;17(1):45-48.

Mendes R, Garbeva P, Raaijmakers JM. The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms. FEMS Microbiol Rev. 2013;37(5):634–663.

Stringlis LA, Yu K Feussner K,, de Jonge R et al. MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health. Proceedings of the National Academy of Sciences USA. 2018;115:E5213–E5222.

Javaid A, Ali A, Shoaib A, Khan IH. Alleviating stress of Sclertium rolfsii on growth of chickpea var. Bhakkar-2011 by Trichoderma harzianum and T. viride. Journal of Animal and Plant Sciences. 2021;31(6):1755-1761.

Mendes R, Kruijt M, de Bruijn I, Dekkers E, van der Voort M, Schneider JH, Piceno YM, . DeSantis TZ, Andersen GL, Bakker PA, Raaijmakers JM. Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science. 2011;332:1097–1100.

Schlatter D, Kinkel L, Thomashow L, Weller D, Paulitz T. Disease suppressive soils: New insights from the soil microbiome. Phytopathology. 2017;107: 1284–1297.

Bais HP, Weir TL, Perry LG, Gilroy S, Vivanco M. The role of root exudates in the rhizosphere interactions with plants and other organisms. Annu. Rev. Plant Biol. 2006;57:233–266.

Walker TS, Bais HP, Grotewold E, Vivanco JM. Root exudation and rhizosphere biology. Plant Physiol. 2003;32:44–51.

Thoms D, Liang Y, Haney CH. Maintaining symbiotic homeostasis: How do plant engage with beneficial microorganisms while at the same time restricting pathogens? Mol. Plant Microbe Interact; 2021.

Saritha Mohanram, Praveen Kumar. Rhizosphere microbiome: revisiting the synergy of plant-microbe interactions. Annals of Microbiology. 2019;69:307–320.

DOI:https://doi.org/10.1007/s13213-019-01448-9

Gopalakrishnan S, Sathya A, Vijayabharathi R, Varshney RK, Gowda CL, Krishnamurthy L. Plant growth promoting rhizobia: challenges and opportunities. 3Biotech. 2015;5:355–377.

Atieno M, Hermann L, Okalebo R, Lesueur D. Efficiency of different formulations of Bradyrhizobium japonicum and effect of coinoculation of Bacillus subtilis with two different strains of Bradyrhizobium japonicum. World J Microbiol Biotechnol. 2012;28:2541–2550.

Costacurt J. Vanderleyden. Synthesis of phytohormones by plant-associated bacteria. Crit Rev Microbiol. 1995;21(1):1–18.

Hui Z, Shang SH, Liu J, He W, Liu XD, Xie XZ. Screening of abscisic acid producing fungi and studies of its fermentation conditions. J Shenyang Institute Chem Technol. 2007;21(3):170–173.

Spaepen S, Vanderleyden J, Remans R. Indole-3-acetic acid in microbial and microorganism-plant signaling. Fems. Microbiol. Rev. 2007;31:425–448.

DOI:https://doi.org/10.1111/j.1574-6976.2007.00072.x

Sharf W, Javaid A, Shoaib A, Khan IH. Induction of resistance in chili against Sclerotium rolfsii by plant growth promoting rhizobacteria and Anagallis arvensis. Egyptian Journal of Biological Pest Control. 2021;31:16.

Wang X, Wang M, Xie X, Guo S, Zhou Y, Zhang X, Yu N, Wang E. An amplification-selection model for quantified rhizosphere microbiota assembly. Science Bulletin. 2020;65:983–986.

DOI:https://doi.org/10.1016/j.scib.2020.03.005

Russo DM, Williams A, Edwards A et al. Proteins exportedvia the PrsD-PrsE type I secretion system and the acidic exopolysaccharide are involved in biofilm formation by Rhizobium leguminosarum. Journal of Bacteriology. 2006;188:4474–4486.

Hossain MM, Sultana F, Miyazawa M, Hyakumachi M, The plant growth-promoting fungus Penicillium spp. GP15-1 enhances growth and confers protection against damping-off and anthracnose in the cucumber. J. Oleo Sci. 2014;63:391–400.

Javaid A, Afzal R, Shoaib A. Biological management of southern blight of chili by Penicillium oxalicum and leaves of Eucalyptus citriodora. International Journal of Agriculture and Biology. 2020;23(1): 93-102.

Ali A, Javaid A, Shoaib A, Khan IH. Effect of soil amendment with Chenopodium album dry biomass and two Trichoderma species on growth of chickpea var. Noor 2009 in Sclerotium rolfsii contaminated soil. Egyptian Journal of Biological Pest Control. 2020;30:102.

Khan IH, Javaid A. DNA cleavage of the fungal pathogen and production of antifungal compounds are the possible mechanisms of action of biocontrol agent Penicillium italicum against Macrophomina phaseolina. Mycologia. 2022;114(1):24-34.

Khan IH, Javaid A. Biocontrol Aspergillus species together with plant biomass alter histochemical characteristics in diseased mungbean plants. Microscopy Research and Technique. 2022;85(8): 2953-2964.

Kakvan N, Heydari A, Zamanizadeh HR, et al. Development of new bio-formulations using Trichoderma and Talaromyces fungal antagonists for biological control of sugar beet damping-off disease. Crop. Prot. 2013;53:80–84.

Bulgarelli D, Schlaeppi K, Spaepen, Van Themaat EVL, Schulze Lefert P. Structure and functions of the bacterial microbiota of plants. Annu Rev Plant Biol. 2013;64:807–838.

Sessitsch A, Mitter B. 21st century agriculture: integration of plant microbiomes for improved crop production and food security. Microb Biotechnol. 2015;8(1):32–33.

Richter D, de B ON-H, R. Fimmen, Jackson J. The rhizosphere and soil formation. In: Cardon ZG, Whitbeck JL (eds) The rhizosphere: an ecological perspective. Elsevier Academic Press, Cambridge. 2011;179–198.

Badri DV, Vivanco JM. Regulation and function of root exudates. Plant Cell Environ. 2009;32:666–681.

Hartmann A, Schmid M, van Tuinen D, Berg G. Plant-driven selection of microbes. Plant Soil. 2009;321:235–257.

Malusà E, Pinzari F, Canfora L. Efficacy of biofertilizers: challenges to improve crop production. In: Singh DP, Singh HB, Prabha R (eds) Microbial inoculants in sustainable agricultural productivity. Springer Mumbai. 2016;17–40.

Lareen, F. Burton and Schafer P. Plant root-microbe communication in shaping root microbiomes. Plant Mol. Biol. 2016; 90:575–587.

DOI: 10.1007/s11103-015-0417-8.

Zarraonaindia I, Owens SM, Weisenhorn P. West K, Hampton Marcell J, Lax S, et al. The soil microbiome influences grapevine-associated microbiota. MBio. 2015;6(2):e02527–14. DOI:https://doi.org/10. 1128/mBio.02527-14 PMID: 25805735.

Kyselkova M, Kopecký, M,. Frapolli GD efago, et al. Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease. ISME J. 2009;3(10):1127.

Kim JJ, Alkawally M, Brady AL, Rijpstra WIV, Damste JSS, Dunfield PF. Chryseolinea serpens gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil. Int. J. Syst. Evol. Microbiol. 2013;63(2):654–660.

Marschner P, Crowley D, Yang CH. Development of specific rhizosphere bacterial communities in relation to plant species, nutrition and soil type. Plant Soil. 2004;261(1-2):199–208.

Leff JW, Jones SE, Prober SM, Barberan A Borer ET, Firn JL, Harpole JS, Hobbie SE, Hofmockel KS, Knops JM, McCulley RL. Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe. Proc. Natl. Acad. Sci. Unit. States Am. 2015;112 (35):10967–10972.

Jing Z, Chen R, Wei S, Feng Y, Zhang J, Lin X Response and feedback of C mineralization to ‘P’ availability driven by soil microorganisms. Soil Biol. Biochem. 2017;105:111–120.

Chen YP, Rekha PD, Arun AB, Shen FT, Lai WA, Young CC. Phosphate solubilizing bacteria from subtropical soil and their tricalcium phosphate solubilizing abilities. Appl Soil Ecol. 2006; 34:33–41.

Sharma SB, Sayyed RZ, Trivedi MH, Gobi TA. Phosphate solubilising microbes: sustainable approach for managing phosphorus deficiency in agricultural soils. Springerplus. 2013;2:587.

Uribe D, Sánchez-Nieves J, Vanegas J. Role of microbial biofertilizers in the development of a sustainable agriculture in the tropics. In: Dion P (ed) Soil biology and agriculture in the tropics. Soil Biology. Springer, Berlin. 2010;21.

Meena KK, Sorty AM, Bitla UM, Choudhary K, Gupta P, Pareek A, Singh DP, Prabha R, Sahu PK, Gupta VK, Singh HB, Krishanani KK, Minhas PS. Abiotic stress responses and microbemediated mitigation in plants: the omics strategies. Front Plant Sci. 2017;8:172.

Sorty AM, Meena KK, Choudhary K, et al. Effect of plant growth promoting bacteria associated with halophytic weed (Psoralea corylifolia L.) on germination and seedling growth of wheat under saline conditions. Appl Biochem Biotechnol. 2016;180:872–882.

Sen S, Chandrasekhar CN. Effect of PGPR on growth promotion of rice (Oryza sativa L.;under salt stress. Asian J Plant Sci Res. 2014;4:62–67.

Jha A, Gontia L, Hartmann A. The roots of the halophyte Salicornia brachiata are a source of new halotolerant diazotrophic bacteria with plant growth-promoting potential. Plant Soil. 356:265–277.

Parani K, Saha BK. Prospects of using phosphate solubilizing Pseudomonas as biofertilizer. Eur. J. Biol. Sci. 2012;4:40–44.

Mahadevamurthy Murali, Banu Naziya, Mohammad Azam Ansari, et al. Bioprospecting of rhizosphere-resident fungi: Their role and importance in sustainable agriculture. J. Fungi 2021;7: 314:1-26.

DOI:https://doi.org/10.3390/jof7040314 https://www.mdpi.com/journal/jof

Zhang S, Gan Y, Xu B. Application of plant-growth-promoting fungi Trichoderma longibrachiatumT6 enhances tolerance of wheat to salt stress through improvement of antioxidative defense system and gene expression. Front. Plant Sci. 2016;7:1405.

Elsharkawy MM, El-Khateeb NMM. Antifungal activity and resistance induction against Sclerotium cepivorum by plant growth-promoting fungi in onion plants. Egypt. J. Biol. Pest Control. 2019;29, 68.

Murali M, Thriveni MC, Manjula S, Mythrashree SP, Amruthesh KN. Isolation of phosphate solubilizing fungi from rhizosphere soil and its effect on seed growth parameters of different crop plants. J Appl. Biol. Biotechnol. 2016;4:022–026.

Salas-Marina MA, Silva-Flores MA, et al. The plant growth-promoting fungus Aspergillus ustus promotes growth and induces resistance against different lifestyle pathogens in Arabidopsis thaliana. J. Microbiol. Biotechnol. 2011;21:686–696.

Mahmoud A, Abd-Alla M. Siderophore production by some microorganisms and their effect on Bradyrhizobium-Mung Bean symbiosis. Int. J Agri. Biol. 2001;3:157–162.

Nenwani V, Doshi P, Saha T, Rajkumar S. Isolation and characterization of a fungal isolate for phosphate solubilization and plant growth promoting activity. J. Yeast Fungal Res. 2010;1:009–014.

Ahmed S, Rahman MS, Hasan NM, Paul N, Sajib AA. Microbial degradation of lingo cellulosic biomass: discovery of novel natural lingo cellulolytic bacteria. Bio Technologia. 2018;99(2)C):137–146.

Khan IH, Javaid A. Antagonistic activity of Aspergillus versicolor against Macrophomina phaseolina. Brazilian Journal of Microbiology. 2022;53(3):1613-1621.

Mendes R, Garbeva P, Raaijmakers JM. The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms. FEMS Microbiol Rev. 2013;37(5): 634–663.

Singh S, Nain L. Microorganisms in the conversion of agricultural wastes to compost. Proc Indian Natn Sci Acad. 2014;80(2):473–481.

Woo HL, Hazen TC, Simmons BA, DeAngelis KM. Enzyme activities of aerobic lingo cellulolytic bacteria isolated from wet tropical forest soils. Syst Appl Microbiol. 2014;37(1):60–67.

Alfano G, Ivey ML, Cakir C, Bos JI, Miller SA, Madden LV, Kamoun S, Hoitink HA. Systemic modulation of gene expression in tomato by Trichoderma hamatum. Phytopathology. 2007;97: 429–437.

Shoresh M, Yedidia I, Chet I. Involvement of jasmonic acid/ethylene signalling pathway in the systemic resistance induced in cucumber by Trichoderma asperellum T203. Phytopathology. 2005;95, 76–84.

Shoresh M, Harman GE. The molecular basis of maize responses to Trichoderma harzianum T22 inoculation: A proteomic approach. Plant Physiol. 2008;147:2147–2163.

Soylu EM, Soylu S. Mansfield JW. Ultrastructural characterisation of pathogen development and host responses during compatible and incompatible interactions between Arabidopsis thaliana and Peronospora parasitica. Physiol. Mol. Plant Pathol. 2004;65:67–78.

Madi L, Katan J. Penicillium janczewskii and its metabolites, applied to leaves, elicit systemic acquired resistance to stem rot caused by Rhizoctonia solani. Physiol. Mol. Plant Pathol. 1998;53: 163–175.

Yuxiang Bai, Ge Wang, Yadong Cheng, Puyou Shi, Chengcui Yang, Huanwen Yang, Zhaoli Xu. Soil acidification in continuously cropped tobacco alters bacterial community structure and diversity via the accumulation of phenolic acids. Scientific Reports. 2019;9:12499.

DOI:https://doi.org/10.1038/s41598-019-48611-5

Xia ZC, Kong CH, Chen LC, Wang SL. Allelochemical-mediated soil microbial community in long-term monospecific Chinese fir forest plantations. Applied Soil Ecology. 2015;96:52–59.

Kotroczó ZZ, et al. Soil enzyme activity in response to long-term organic matter manipulation. Soil Biology and Biochemistry. 2014;70:237–243.

Wang Y et al. Environmental behaviors of phenolic acids dominated their rhizodeposition in boreal poplar plantation forest soils. Journal of Soils and Sediments. 2016;16:1858–1870.

Flaig W. Organic compounds in soil. Soil Science. 1971;111:19–33.

Xiao CL, et al. Autotoxic effects of root exudates of soybean. Allelopathy Journal. 2006;18:121–127.

Chen L et al. Trichoderma harzianum SQR-T037 rapidly degrades allelochemicals in rhizospheres of continuously cropped cucumbers. Applied Microbiology and Biotechnology. 2011;89:1653–1663.

Whitehead DC, Dibb H and Hartley RD. Extractant pH and the release of phenolic compounds from soils, plant roots and leaf litter. Soil Biology and Biochemistry. 1981; 13:343–348.

Subhashini DV, Padmaja K. Population dynam¬ics and screening of phosphate-solubilizing bacteria isolated from tobacco (Nicotiana tabacum;– based cropping systems. Indian J Agric Sci. 2011; 81(8):740–743.

Manpoong B, De Mandal S, Bangaruswamy DK, et al. Linking rhizosphere soil biochemical and microbial community characteristics across different land use systems in mountainous region in Northeast India. Meta Gene. 2020;23, 100625.

Shenoi MM and Sreenivas SS. Bio-intensive integrated disease management of FCV tobacco nursery in Karnataka Light Soils. J. Biol. Control. 2007;21(2):197-201.

Mahadevaswamy M, Shenoi MM, Sreenivas SS and Ramakrishnan S. Studies on production of Tray nursery seedlings of FCV tobacco under KLS situation. 2007. Tob. Res. 2007; 33(1&2):17-20.

Ramakrishnan S, Shenoi MM, Sreenivas SS. Influence of antagonistic bacterium Pseudomonas fluorescens against root-knot nematodes in FCV tobacco nursery. Tob. Res. 2009;35:44-50.

Seema M, Ramakrishnan S, Sreenivas SS and Devaki NS. Evaluation of Trichoderma viride formulations against sore shin disease in Flue-Cured Virginia (FCV) tobacco nurseries. J. Biological control. 2011;25(4):333-336.

Ramakrishnan S, Nagesh M. Evaluation of beneficial fungi in combination with organics against root knot nematode in FCV tobacco nurseries. J. Biological. Control. 2011;25:164-167.

Ramakrishnan S, Sreenivas SS, Shenoi MM. Bio-management of root knot nematode in FCV tobacco nursery of KLS. Indian J. Nematology. 2012;42:169-172.

Ramakrishnan S, Panduranga Rao C. Evaluation of Paecilomyces lilacinus for the management of root-knot nematode, Meloidogyne incognita in flue cured Virginia (FCV;Tobacco Nursery. Indian J. Nematology. 2013;43(1):65-69.

Choi SK, Jeong H, Kloepper JW, Ryu CM. Genome sequence of Bacillus amyloliquefaciens GB03, an active ingredient of the first commercial biological control product. Genome Announc. 2014; 2.

de Vrieze M, Germanier F, Vuille N, Weisskopf L. Combining different potato associated Pseudomonas strains for improved biocontrol of Phytophthora infestans. Front Microbiol. 2018;9: 2573.

Parnell JJ, Berka R, Young HA, Sturino JM, Kang K, Barnhart DM, et al. From the lab to the farm: an industrial perspective of plant beneficial microorganisms. Front Plant Sci. 2016;7:1110.

Ramakrishnan S, Sreenivas SS. Bio-management of fusarium wilt disease complex with Pseudomonas fluorescens and Aspergillus niger. J. Biological Control. 2012;26:368-372.

Ramakrishnan S, Sreenivas SS. Biological control of soil-borne fungal and root-knot nematode disease complex in FCV tobacco nursery. J.Biological Control. 2015;29(4):203-206.

Yadav RL, Shukla SK, Suman A, Singh PN. Trichoderma inoculation and trash management effects on soil microbial biomass, soil respiration, nutrient uptake and yield of ratoon sugarcane under subtropical conditions. Biol. Fertil. Soils. 2009;45:461–468.

Shivanna MB, Meera MS, Kubota M, Hyakumachi M. Promotion of growth and yield in cucumber by zoysia grass rhizosphere fungi. Microbes Environ. 2005;20:34–40.

Sindhu GM, Murali M, Thriveni MC, Anupama N, Amruthesh KN. Growth promotion and disease resistance in muskmelon induced by crude proteins of Penicillium verruculosum against gummy stem blight disease. J. Crop. Sci. 2018; 10:160–167.

Toth L, Varadi G, Boros E, Borics A, Ficze H, Nagy I, Toth GK, Rakhely G, Marx F, Galgoczy L. Bio-fungicidal potential of Neosartorya (Aspergillus) fischeri antifungal protein NFAP and novel synthetic -core peptides. Front. Microbiol. 2020;11:820.

Ramakrishnan S and Mahadevaswamy M. Efficacy of vermicompost against root knot nematodes, Meloidogyne spp in FCV tobacco. Indian J. Nematology. 2012; 42:143-145.

Ramakrishnan S, Sreenivas SS, Shenoi MM, Mahadevaswamy M. Evaluation of fresh poultry manure as organic amendment for the management of root-knot nematode, Meloidogyne incognita in flue-cured virginia (FCV) tobacco nursery. Indian J. Nematology. 2012;44(2):154-158.

Abdul Wajid SM, Shenoi MM, Sreenivas SS. Seed bed solarization as a component of integrated disease management in VFC tobacco nurseries of Karnataka. Tob. Res. 1995;21:58-65.

Campisano L, Antonielli M, Pancher S, Yousaf M, Pindo I, Pertot et al. Bacterial endophytic communities in the grapevine depend on pest management. PLoS ONE. 2014;9:e112763.

Longa CMO, Nicola L, Antonielli L, Mescalchin E, Zanzotti R, Turco E, et al. Soil microbiota respond to green manure in organic vineyards. J Appl Microbiol. 2017;123:1547–60.

Abhilash PC, Powell JR, Singh HB, Singh BK. Plant-microbe interactions: novel applications for exploitation in multipurpose remediation technologies. Trends Biotechnol. 2012;30:416–20.